| AkaikeInformationCriteria.cpp [code] | |
| AkaikeInformationCriteria.hpp [code] | |
| Alphabet.cpp [code] | |
| Alphabet.hpp [code] | |
| BayesianInformationCriteria.cpp [code] | |
| BayesianInformationCriteria.hpp [code] | |
| BernoulliModelCreator.cpp [code] | |
| BernoulliModelCreator.hpp [code] | |
| ConfigurationReader.cpp [code] | |
| ConfigurationReader.hpp [code] | |
| ContextTree.cpp [code] | |
| ContextTree.hpp [code] | |
| crossplatform.hpp [code] | |
| DecodableModel.cpp [code] | |
| DecodableModel.hpp [code] | |
| DegenerateDistribution.hpp [code] | |
| DiscreteIIDModel.cpp [code] | |
| DiscreteIIDModel.hpp [code] | |
| DiscreteIIDModelCreateModel.cpp [code] | |
| DiscreteIIDModelCreator.cpp [code] | |
| DiscreteIIDModelCreator.hpp [code] | |
| FactorableModel.cpp [code] | |
| FactorableModel.hpp [code] | |
| FactorableModelPrefixSumArray.cpp [code] | |
| FactorableModelPrefixSumArray.hpp [code] | |
| FixedSequenceAtPosition.cpp [code] | |
| FixedSequenceAtPosition.hpp [code] | |
| FixedSequenceAtPositionCreator.cpp [code] | |
| FixedSequenceAtPositionCreator.hpp [code] | |
| GeneralizedHiddenMarkovModel.cpp [code] | |
| GeneralizedHiddenMarkovModel.hpp [code] | |
| GeneralizedHiddenMarkovModelCreator.cpp [code] | |
| GeneralizedHiddenMarkovModelCreator.hpp [code] | |
| GeneralizedPairHiddenMarkovModel.cpp [code] | |
| GeneralizedPairHiddenMarkovModel.hpp [code] | |
| GeneralizedPairHiddenMarkovModelCreator.cpp [code] | |
| GeneralizedPairHiddenMarkovModelCreator.hpp [code] | |
| GHMMStates.cpp [code] | |
| GHMMStates.hpp [code] | |
| HiddenMarkovModel.cpp [code] | |
| HiddenMarkovModel.hpp [code] | |
| HiddenMarkovModelCreator.cpp [code] | |
| HiddenMarkovModelCreator.hpp [code] | |
| InhomogeneousFactorableModel.cpp [code] | |
| InhomogeneousFactorableModel.hpp [code] | |
| InhomogeneousMarkovChain.cpp [code] | |
| InhomogeneousMarkovChain.hpp [code] | |
| InhomogeneousMarkovChainCreator.cpp [code] | |
| InhomogeneousMarkovChainCreator.hpp [code] | |
| MaximumDependenceDecomposition.cpp [code] | |
| MaximumDependenceDecomposition.hpp [code] | |
| MultipleAlignment.cpp [code] | |
| MultipleAlignment.hpp [code] | |
| MultipleSequentialModel.cpp [code] | |
| MultipleSequentialModel.hpp [code] | |
| MultipleSequentialModelCreator.cpp [code] | |
| MultipleSequentialModelCreator.hpp [code] | |
| NullPrefixSumArray.hpp [code] | |
| PairDecodableModel.hpp [code] | |
| PairHiddenMarkovModel.cpp [code] | |
| PairHiddenMarkovModel.hpp [code] | |
| PairHiddenMarkovModelCreator.cpp [code] | |
| PairHiddenMarkovModelCreator.hpp [code] | |
| PhasedFactorableModelEvaluationAlgorithm.cpp [code] | |
| PhasedFactorableModelEvaluationAlgorithm.hpp [code] | |
| PhasedRunLengthDistribution.cpp [code] | |
| PhasedRunLengthDistribution.hpp [code] | |
| PhasedRunLengthDistributionCreator.cpp [code] | |
| PhasedRunLengthDistributionCreator.hpp [code] | |
| PrefixSumArray.hpp [code] | |
| ProbabilisticModel.hpp [code] | |
| ProbabilisticModelCreator.hpp [code] | |
| ProbabilisticModelCreatorClient.cpp [code] | |
| ProbabilisticModelCreatorClient.hpp [code] | |
| ProbabilisticModelDecorator.hpp [code] | |
| ProbabilisticModelParameter.cpp [code] | |
| ProbabilisticModelParameter.hpp [code] | |
| RemoveSequenceFromModel.cpp [code] | |
| RemoveSequenceFromModel.hpp [code] | |
| ReverseComplementDNA.cpp [code] | |
| ReverseComplementDNA.hpp [code] | |
| ReverseComplementDNACreator.cpp [code] | |
| ReverseComplementDNACreator.hpp [code] | |
| Sequence.hpp [code] | |
| SequenceEntry.cpp [code] | |
| SequenceEntry.hpp [code] | |
| SequenceFactory.cpp [code] | |
| SequenceFactory.hpp [code] | |
| SequenceFormat.cpp [code] | |
| SequenceFormat.hpp [code] | |
| SimilarityBasedSequenceWeighting.cpp [code] | |
| SimilarityBasedSequenceWeighting.hpp [code] | |
| SimilarityBasedSequenceWeightingCreator.cpp [code] | |
| SimilarityBasedSequenceWeightingCreator.hpp [code] | |
| SmoothedHistogramBurge.cpp [code] | |
| SmoothedHistogramBurge.hpp [code] | |
| SmoothedHistogramKernelDensity.cpp [code] | |
| SmoothedHistogramKernelDensity.hpp [code] | |
| SmoothedHistogramStanke.cpp [code] | |
| SmoothedHistogramStanke.hpp [code] | |
| SparseMatrix.cpp [code] | |
| SparseMatrix.hpp [code] | |
| StoreLoadedModel.cpp [code] | |
| StoreLoadedModel.hpp [code] | |
| Symbol.cpp [code] | |
| Symbol.hpp [code] | |
| TargetModel.cpp [code] | |
| TargetModel.hpp [code] | |
| TargetModelCreator.cpp [code] | |
| TargetModelCreator.hpp [code] | |
| TrainDiscreteIIDModel.cpp [code] | |
| TrainDiscreteIIDModel.hpp [code] | |
| TrainFixedLengthMarkovChain.cpp [code] | |
| TrainFixedLengthMarkovChain.hpp [code] | |
| TrainGHMMTransitions.cpp [code] | |
| TrainGHMMTransitions.hpp [code] | |
| TrainHMMBaumWelch.cpp [code] | |
| TrainHMMBaumWelch.hpp [code] | |
| TrainInterpolatedMarkovChain.cpp [code] | |
| TrainInterpolatedMarkovChain.hpp [code] | |
| TrainInterpolatedPhasedMarkovChain.cpp [code] | |
| TrainInterpolatedPhasedMarkovChain.hpp [code] | |
| TrainPhasedMarkovChain.cpp [code] | |
| TrainPhasedMarkovChain.hpp [code] | |
| TrainPhasedMarkovChainContextAlgorithm.cpp [code] | |
| TrainPhasedMarkovChainContextAlgorithm.hpp [code] | |
| TrainPHMMBaumWelch.cpp [code] | |
| TrainPHMMBaumWelch.hpp [code] | |
| TrainSimilarityBasedSequenceWeighting.cpp [code] | |
| TrainSimilarityBasedSequenceWeighting.hpp [code] | |
| TrainVariableLengthInhomogeneousMarkovChain.cpp [code] | |
| TrainVariableLengthInhomogeneousMarkovChain.hpp [code] | |
| TrainVariableLengthMarkovChain.cpp [code] | |
| TrainVariableLengthMarkovChain.hpp [code] | |
| TrainWeightArrayModel.cpp [code] | |
| TrainWeightArrayModel.hpp [code] | |
| UniformGCModel.hpp [code] | |
| util.cpp [code] | |
| util.hpp [code] | |
| VariableLengthMarkovChain.cpp [code] | |
| VariableLengthMarkovChain.hpp [code] | |
| VariableLengthMarkovChainCreator.cpp [code] | |
| VariableLengthMarkovChainCreator.hpp [code] | |
| version.hpp [code] | |
