ToPS
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00001 /* 00002 * HiddenMarkovModelCreator.cpp 00003 * 00004 * Copyright 2011 Andre Yoshiaki Kashiwabara <akashiwabara@usp.br> 00005 * Ígor Bonádio <ibonadio@ime.usp.br> 00006 * Vitor Onuchic <vitoronuchic@gmail.com> 00007 * Alan Mitchell Durham <aland@usp.br> 00008 * 00009 * This program is free software; you can redistribute it and/or modify 00010 * it under the terms of the GNU General Public License as published by 00011 * the Free Software Foundation; either version 3 of the License, or 00012 * (at your option) any later version. 00013 * 00014 * This program is distributed in the hope that it will be useful, 00015 * but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 00017 * GNU General Public License for more details. 00018 * 00019 * You should have received a copy of the GNU General Public License 00020 * along with this program; if not, write to the Free Software 00021 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 00022 * MA 02110-1301, USA. 00023 */ 00024 00025 #include "HiddenMarkovModelCreator.hpp" 00026 #include "DiscreteIIDModelCreator.hpp" 00027 #include "DiscreteIIDModel.hpp" 00028 #include "ConfigurationReader.hpp" 00029 #include "HiddenMarkovModel.hpp" 00030 #include "Alphabet.hpp" 00031 #include "Symbol.hpp" 00032 namespace tops { 00033 ProbabilisticModelPtr HiddenMarkovModelCreator::create(ProbabilisticModelParameters & parameters) const { 00034 ProbabilisticModelParameterValuePtr state_names = parameters.getMandatoryParameterValue("state_names"); 00035 ProbabilisticModelParameterValuePtr observation_symbols = parameters.getMandatoryParameterValue("observation_symbols"); 00036 ProbabilisticModelParameterValuePtr initial_probabilities = parameters.getMandatoryParameterValue("initial_probabilities"); 00037 ProbabilisticModelParameterValuePtr transitions = parameters.getMandatoryParameterValue("transitions"); 00038 ProbabilisticModelParameterValuePtr emissions = parameters.getMandatoryParameterValue("emission_probabilities"); 00039 00040 if((state_names == NULL)|| 00041 (observation_symbols == NULL)|| 00042 (initial_probabilities == NULL) || 00043 (transitions == NULL) || 00044 (emissions == NULL)) 00045 { 00046 std::cerr << help() << std::endl; 00047 } 00048 ProbabilisticModelPtr model = HiddenMarkovModelPtr(new HiddenMarkovModel()); 00049 model->initialize(parameters); 00050 return model; 00051 } 00052 }