ToPS
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00001 /* 00002 * TargetModelCreator.cpp 00003 * 00004 * Copyright 2011 Andre Yoshiaki Kashiwabara <akashiwabara@usp.br> 00005 * Ígor Bonádio <ibonadio@ime.usp.br> 00006 * Vitor Onuchic <vitoronuchic@gmail.com> 00007 * Alan Mitchell Durham <aland@usp.br> 00008 * 00009 * This program is free software; you can redistribute it and/or modify 00010 * it under the terms of the GNU General Public License as published by 00011 * the Free Software Foundation; either version 3 of the License, or 00012 * (at your option) any later version. 00013 * 00014 * This program is distributed in the hope that it will be useful, 00015 * but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 00017 * GNU General Public License for more details. 00018 * 00019 * You should have received a copy of the GNU General Public License 00020 * along with this program; if not, write to the Free Software 00021 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 00022 * MA 02110-1301, USA. 00023 */ 00024 00025 #include "TargetModelCreator.hpp" 00026 #include "TargetModel.hpp" 00027 namespace tops { 00028 ProbabilisticModelPtr TargetModelCreator::create(ProbabilisticModelParameters & parameters) const { 00029 ProbabilisticModelParameterValuePtr alphabet = parameters.getOptionalParameterValue("alphabet"); 00030 TargetModelPtr model = TargetModelPtr(new TargetModel()); 00031 if (alphabet != NULL) 00032 { 00033 AlphabetPtr alpha = AlphabetPtr(new Alphabet()); 00034 alpha->initializeFromVector(alphabet->getStringVector()); 00035 model->setAlphabet(alpha); 00036 } else 00037 { 00038 std::cerr << help() << std::endl; 00039 exit(-1); 00040 } 00041 return model; 00042 00043 } 00044 }