ToPS
|
00001 /* 00002 * FactorableModelPrefixSumArray.hpp 00003 * 00004 * Copyright 2011 Andre Yoshiaki Kashiwabara <akashiwabara@usp.br> 00005 * �gor Bon�dio <ibonadio@ime.usp.br> 00006 * Vitor Onuchic <vitoronuchic@gmail.com> 00007 * Alan Mitchell Durham <aland@usp.br> 00008 * 00009 * This program is free software; you can redistribute it and/or modify 00010 * it under the terms of the GNU General Public License as published by 00011 * the Free Software Foundation; either version 3 of the License, or 00012 * (at your option) any later version. 00013 * 00014 * This program is distributed in the hope that it will be useful, 00015 * but WITHOUT ANY WARRANTY; without even the implied warranty of 00016 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 00017 * GNU General Public License for more details. 00018 * 00019 * You should have received a copy of the GNU General Public License 00020 * along with this program; if not, write to the Free Software 00021 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 00022 * MA 02110-1301, USA. 00023 */ 00024 00025 #ifndef FACTORABLE_PREFIX_SUM_ARRAY_HPP 00026 #define FACTORABLE_PREFIX_SUM_ARRAY_HPP 00027 00028 #include "crossplatform.hpp" 00029 00030 #include <boost/shared_ptr.hpp> 00031 #include "Sequence.hpp" 00032 #include "PrefixSumArray.hpp" 00033 #include "ProbabilisticModel.hpp" 00034 #include "util.hpp" 00035 00036 namespace tops { 00037 00039 class DLLEXPORT FactorableModelPrefixSumArray : public PrefixSumArray 00040 { 00041 private: 00042 ProbabilisticModel * _model; 00043 DoubleVector _alpha; 00044 DoubleVector _precision; 00045 Sequence _last; 00046 public: 00047 virtual ~FactorableModelPrefixSumArray(){}; 00048 FactorableModelPrefixSumArray (ProbabilisticModel * model) : _model(model) {} 00050 virtual void initialize(const Sequence & s) ; 00051 00053 virtual double compute(int begin, int end ) const ; 00054 00055 00056 }; 00057 00058 typedef boost::shared_ptr <FactorableModelPrefixSumArray> FactorableModelPrefixSumArrayPtr; 00059 } 00060 00061 #endif