Interface defining inhomogeneous models in which the likelihood of the sequence is factorable in the sense that they can be expressed as a product of terms evaluated at each position in a sequence. More...
#include <InhomogeneousFactorableModel.hpp>
Public Member Functions | |
| virtual double | evaluate (const Sequence &s, unsigned int begin, unsigned int end) const |
| Calculates the sequence likelihood given this model. | |
| virtual double | evaluatePosition (const Sequence &s, int i, int t) const =0 |
| Evaluate the position i of the sequence s. | |
| virtual int | choosePosition (const Sequence &s, int i, int t) const =0 |
| Choose the position i of the sequence s given the subsequence before the position i. | |
| virtual int | maximumTimeValue () const =0 |
| Returns the maximum value of t. | |
| virtual bool | isPhased () const =0 |
| Phased. | |
Detailed Description
Interface defining inhomogeneous models in which the likelihood of the sequence is factorable in the sense that they can be expressed as a product of terms evaluated at each position in a sequence.
Definition at line 34 of file InhomogeneousFactorableModel.hpp.
Member Function Documentation
| virtual int tops::InhomogeneousFactorableModel::choosePosition | ( | const Sequence & | s, |
| int | i, | ||
| int | t | ||
| ) | const [pure virtual] |
Choose the position i of the sequence s given the subsequence before the position i.
- Parameters:
-
s is the sequence i is the position of the sequence t is the considered time
Implemented in tops::InhomogeneousMarkovChain.
| virtual double tops::InhomogeneousFactorableModel::evaluatePosition | ( | const Sequence & | s, |
| int | i, | ||
| int | t | ||
| ) | const [pure virtual] |
Evaluate the position i of the sequence s.
- Parameters:
-
s is the sequence i is the position of the sequence t is the considered time
Reimplemented from tops::ProbabilisticModel.
Implemented in tops::InhomogeneousMarkovChain.
The documentation for this class was generated from the following files:
