This class is a Variable Length Markov Chain. More...
#include <VariableLengthMarkovChain.hpp>
Inheritance diagram for tops::VariableLengthMarkovChain:
Public Member Functions | |
| virtual void | setTree (ContextTreePtr tree) |
| Set the context tree of the Markov chain. | |
| virtual ContextTreePtr | getTree () |
| Returns the context tree. | |
| virtual double | evaluatePosition (const Sequence &s, unsigned int i) const |
| Evaluate the position i of the sequence s. | |
| virtual double | choosePosition (const Sequence &s, int i) const |
| Choose the position i of the sequence s given the subsequence before the position i. | |
| virtual std::string | str () const |
| Returns a string representation of the model. | |
| virtual std::string | model_name () const |
| Returns the name of the model. | |
|
virtual ProbabilisticModelCreatorPtr | getFactory () const |
| Returns a factory for this Markov chain. | |
| virtual int | size () const |
| Returns the number of parameters of the model. | |
| virtual void | initialize (const ProbabilisticModelParameters &p) |
| Initialize the Markov chain given the parameters. | |
|
virtual ProbabilisticModelParameters | parameters () const |
| Returns the parameters of the model. | |
Detailed Description
This class is a Variable Length Markov Chain.
Definition at line 43 of file VariableLengthMarkovChain.hpp.
The documentation for this class was generated from the following files:
