This is the complete list of members for
tops::VariableLengthMarkovChain, including all inherited members.
| alphabet() const | tops::ProbabilisticModel | [inline, virtual] |
| tops::ProbabilisticModel::choose() const | tops::ProbabilisticModel | [inline, virtual] |
| choosePosition(const Sequence &s, int i) const | tops::VariableLengthMarkovChain | [virtual] |
| evaluate(const Sequence &s, unsigned int begin, unsigned int end) const | tops::FactorableModel | [virtual] |
| evaluatePosition(const Sequence &s, unsigned int i) const | tops::VariableLengthMarkovChain | [virtual] |
| tops::ProbabilisticModel::evaluatePosition(const Sequence &s, int i, int t) const | tops::ProbabilisticModel | [inline, virtual] |
| getFactory() const | tops::VariableLengthMarkovChain | [virtual] |
| getTree() | tops::VariableLengthMarkovChain | [inline, virtual] |
| initialize(const ProbabilisticModelParameters &p) | tops::VariableLengthMarkovChain | [virtual] |
| log_probability_of(int s) const | tops::ProbabilisticModel | [inline, virtual] |
| model_name() const | tops::VariableLengthMarkovChain | [inline, virtual] |
| parameters() const | tops::VariableLengthMarkovChain | [virtual] |
| probability_of(int s, double new_value) | tops::ProbabilisticModel | [inline, virtual] |
| setAlphabet(AlphabetPtr alphabet) | tops::ProbabilisticModel | [inline, virtual] |
| setTree(ContextTreePtr tree) | tops::VariableLengthMarkovChain | [inline, virtual] |
| size() const | tops::VariableLengthMarkovChain | [virtual] |
| str() const | tops::VariableLengthMarkovChain | [virtual] |
| trainBaumWelch(SequenceList &training_set, int maxiterations, double diff) | tops::ProbabilisticModel | [inline, virtual] |
