tops::ContextTree Class Reference

This class represents a context tree. More...

#include <ContextTree.hpp>

List of all members.

Public Member Functions
ContextTreeNodePtr	getRoot () const
	return the root of the tree
ContextTreeNodePtr	createContext ()
	Create new context.
ContextTreeNodePtr	getContext (const Sequence &s, int i)
	get the context for the sequence s[i-1], s[i-2], s[i-3]...
void	normalize (ProbabilisticModelPtr old, double pseudocount, int i)
	normalize using a tree to get the a priori probabilities
void	normalize (ProbabilisticModelPtr old, double pseudocount)
	normalize using a tree to get the a priori probabilities
void	pruneTree (double delta)
	Prune similar subtrees.
void	pruneTreeSmallSampleSize (int small_)
	Prune subtrees with small counters.
void	initializeContextTreeRissanen (const SequenceEntryList &sequences)
	Initialize context tree using the Rissanen algorithm.

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Detailed Description

This class represents a context tree.

Definition at line 123 of file ContextTree.hpp.

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The documentation for this class was generated from the following files:

• ContextTree.hpp
• ContextTree.cpp