, including all inherited members.
| _viterbi(const Sequence &s, Sequence &path, Matrix &gamma) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| alphabet() const | tops::ProbabilisticModel | [inline, virtual] |
| backward(const Sequence &s, Matrix &beta) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| tops::ProbabilisticModel::choose() const | tops::ProbabilisticModel | [inline, virtual] |
| chooseFirstState() const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| chooseObservation(Sequence &h, int i, int state) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| choosePath(const Sequence &s, Sequence &path) | tops::GeneralizedHiddenMarkovModel | [virtual] |
| chooseState(int state) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| evaluate(const Sequence &s, unsigned int begin, unsigned int end) const | tops::DecodableModel | [virtual] |
| evaluatePosition(const Sequence &s, unsigned int i) const | tops::ProbabilisticModel | [inline, virtual] |
| evaluatePosition(const Sequence &s, int i, int t) const | tops::ProbabilisticModel | [inline, virtual] |
| forward(const Sequence &s, Matrix &alpha) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| getInitialProbabilities() const | tops::GeneralizedHiddenMarkovModel | [inline, virtual] |
| getStateName(int state) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| getStateNames() const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| log_probability_of(int s) const | tops::ProbabilisticModel | [inline, virtual] |
| model_name() const | tops::GeneralizedHiddenMarkovModel | [inline, virtual] |
| posteriorDecoding(const Sequence &s, Sequence &path, Matrix &probabilities) const | tops::DecodableModel | [virtual] |
| tops::DecodableModel::posteriorProbabilities(const Sequence &s, Matrix &probabilities) const | tops::DecodableModel | [virtual] |
| tops::DecodableModel::posteriorProbabilities(const Sequence &s, SparseMatrixPtr probabilities) const | tops::DecodableModel | [virtual] |
| probability_of(int s, double new_value) | tops::ProbabilisticModel | [inline, virtual] |
| setAlphabet(AlphabetPtr alphabet) | tops::ProbabilisticModel | [inline, virtual] |
| size() const | tops::ProbabilisticModel | [inline, virtual] |
| str() const | tops::GeneralizedHiddenMarkovModel | [virtual] |
| trainBaumWelch(SequenceList &training_set, int maxiterations, double diff) | tops::ProbabilisticModel | [inline, virtual] |
| viterbi(const Sequence &s, Sequence &path, Matrix &gamma) const | tops::GeneralizedHiddenMarkovModel | [virtual] |
